Cytosim  PI
Cytoskeleton Simulator
Hand and Derived Activities

A Hand can bind to a Fiber, and derived class can do more things. More...

Classes

class  Hand
 Simulates the stochastic binding/unbinding of a FiberBinder. More...
 
class  Actor
 A Hand that can act on a Fiber. More...
 
class  Cutter
 A Hand that can cut a Fiber. More...
 
class  Mighty
 A Hand that can move and do other things to a Fiber. More...
 
class  Motor
 a Hand that can move smoothly on a Fiber More...
 
class  Nucleator
 A Hand that can nucleate a Fiber. More...
 
class  Rescuer
 A Hand that may rescue a shrinking fiber. More...
 
class  Slider
 A Hand that will move on a Fiber passively with viscous resistance. More...
 
class  Tracker
 A Hand that only binds near the end of a Fiber. More...
 

Detailed Description

A plain Hand can only bind and unbind from a Fiber. Derived classes are available that implement more complex functionalities, for example molecular motors or severing enzymes.

List of classes accessible by specifying hand:activity:

activity Class Parameters
bind Hand Parameters of Hand (default)
move Motor Parameters of Motor
nucleate Nucleator Parameters of Nucleator
slide Slider Parameters of Slider
track Tracker Parameters of Tracker
rescue Rescuer Parameters of Rescuer
cut Cutter Parameters of Cutter
mighty Mighty Parameters of Mighty
act Actor Parameters of Actor

Example:

set hand motor
{
binding = 10, 0.05
unbinding = 0.2, 3
activity = move
max_speed = 1
stall_force = 5
}